Package index • VasGBIF

Package overview

VasGBIF: Fast and Easy Compilation of Vascular Plants Occurrence Records from GBIF

Step 1 — Import Records

import_records(): Import GBIF occurrence records

Step 2 — Check Taxon Name

check_taxon(): Resolve taxon names via the Taxonomic Name Resolution Service

Step 3 — Customized Filter

customized_filter(): Apply custom quality filters to occurrence records

Step 4 — Clean Coordinates

par_clean_coordinates(): Validate coordinates of filtered occurrence records

Step 5 — Detect Native Status

detect_native_coord(): Detect native status from WGSRPD distributions
detect_native_country(): Detect native status from country codes

Step 6 — Map Records

map_records(): Visualize refined records on interactive maps

Step 7 — Export Records

export_records(): Export classified records to compressed CSV files

Print methods

print(<import>): Print an import object
print(<occ_taxa>): Print an occ_taxa object
print(<CoordinateRefined>): Print a CoordinateRefined object
print(<customFiltered>): Print a customFiltered object
print(<nativeDetected>): Print a nativeDetected object

Utilities

set_threads(): Normalize the number of worker threads

Internal datasets

Distributions: The World Checklist of Vascular Plants Distributions
EnumOccurrenceIssue: Enumeration of GBIF occurrence issues
Level3maping: WGSRPD Level 3 area codes, names and country concordance
WGSRPD3: Biodiversity Information Standards (TDWG) World Geographical Scheme for Recording Plant Distributions (WGSRPD)
WorldLandMap: A simple features object of the world land map